Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs67501853 | chr17:4882332 | G/A | 2.93E-7 | 506 | 37.53 | 32.57 | 3.37 | KM Plot |
KIRC | rs67537736 | chr6:37674111 | CAG/C | 3.2E-7 | 497 | 37.47 | 35.43 | 3.37 | KM Plot |
KIRC | rs67554133 | chr6:25866232 | T/A | 8.42E-5 | 503 | 37.73 | 32.62 | 4.1 | KM Plot |
KIRC | rs6760857 | chr2:67559647 | G/A | 3.14E-7 | 500 | 37.18 | 37.35 | 2.03 | KM Plot |
KIRC | rs67680791 | chr4:169151020 | T/C | 1.92E-8 | 509 | 37.03 | 39.7 | 3.1 | KM Plot |
KIRC | rs67744147 | chr19:43817461 | T/C | 7.3E-12 | 499 | 37.67 | 37.47 | 2.17 | KM Plot |
KIRC | rs6782166 | chr3:48351683 | A/G | 7.7E-6 | 505 | 37.6 | 37.77 | 19.13 | KM Plot |
KIRC | rs67844427 | chr6:25931020 | G/A | 0.000109 | 504 | 37.73 | 31.53 | 4.1 | KM Plot |
KIRC | rs6793150 | chr3:48351560 | G/A | 7.7E-6 | 505 | 37.6 | 37.77 | 19.13 | KM Plot |
KIRC | rs6793223 | chr3:48364101 | C/T | 2.88E-5 | 502 | 37.47 | 38.83 | 22.42 | KM Plot |
KIRC | rs6793239 | chr3:48351618 | G/T | 7.7E-6 | 505 | 37.6 | 37.77 | 19.13 | KM Plot |
KIRC | rs67956795 | chr19:43810788 | C/T | 4.82E-12 | 505 | 37.53 | 36.4 | 2.17 | KM Plot |
KIRC | rs6796343 | chr3:48282021 | C/A | 1.74E-5 | 501 | 37.7 | 37.6 | 19.13 | KM Plot |
KIRC | rs6800492 | chr3:48323890 | G/A | 5.87E-5 | 500 | 38 | 36.93 | 21.12 | KM Plot |
KIRC | rs68149500 | chr6:26111271 | C/T | 1.81E-8 | 496 | 37.77 | 36.28 | 3.37 | KM Plot |